Computational Systems Biology
at the University of Virginia
HS68 Fibroblast Crosstalk with Melanoma Public data from the study of crosstalk between HS68 fibroblast and melanoma.
Cowpea Genomics Initiative Cowpea genespace sequencing and analysis project
Cowpea Genespace Knowledgebase Data mining and tools to use the cowpea genespace reads. Includes BLAST annotations, SSRs, and downloads.
UVa OMSSA Web Introduction UVa's free, improved web interface to OMSSA
UVa OMSSA Web (password required)
TOBFAC: Tobacco Transcription FactorsOpen source XLST scripts for use with OMSSA
OMSSA and pepXML XSLT scripts tar format
OMSSA and pepXML XSLT scripts zip format
Sites currently being developed. Not open to the public yet.
TOBGEN: Tobacco Genomics
COPFAC: Cowpea Transcription Factors
Cowpea and tobacco contacts
Dr. Mike Timko (Primary investigator, cowpea, tobacco) mpt9g@virginia.edu
Dr. Xianfeng Jeff Chen (Computational biologist) xc3m@virginia.edu
Dr. Paul Rushton (Senior scientist, tobacco, transcription factors) pr8y@virginia.edu
Marta Bokowiec (Scientist) mtb8u@virginia.edu
Jen Brannock (Scientist) jrf5s@virginia.edu
Tom Laudeman (Software engineer, bioinformatics, DBA, Linux sysadmin) twl8n@virginia.edu
Jim Roberts (Software engineer, bioinformatics, DBA, Linux and Windows sysadmin) jhr2b@virginia.edu