TOBFAC Blast

Notes:
blastp: compares an amino acid query sequence against a protein sequence database

blastn: compares a nucleotide query sequence against a nucleotide sequence database

blastx: compares a nucleotide query sequence translated in all reading frames against a protein sequence database

tblastn: compares a protein query sequence against a nucleotide sequence database dynamically translated in all reading frames

tblastx: compares the six-frame translations of a nucleotide query sequence against the six-frame translations of a nucleotide sequence database.

Sample Sequence:
This hits ARID_1 with blastn at 1e-5 against the TOBFAC transcription factor sequence search library.
This hits ARID_1 and ARID_2 with tblastx at 1e-5 searching the TOBFAC transcription factor sequence library.

TTTTTTACTGGACTGTTCCTATCATTGGAGTGTGGTAACACCA
CAGGAGATGACCAATCACAATATTTCCTTTTCCCGGCCGAGTCATCTATG
CTATCCCCAGAACCTAAAGAAAGATTATAACCTTCAAACAAAGAAGAGAG
TTTATCAACAACTAGTCGTACTGGACTAGGGATTAAAATATTCAACTTAT
AGAAACCATAGACCCCCAAACTTTCAAGAAGACAGTTTACCTTTTAATGA
TACTGCCCTAGCAGTAGCAGAAACTTGATGACTAGGTGGTGGTATAGTTG
CTTTTCCTCGACTTCGATAGTAATACATTTGCTCAAATTGGAGAAGAAGA
TTTTCGTAGACCTTCTGAAGTTGAGTTGGGAACATTACGACGTTGCTTTT
CACATGCAAAGAAGATGCAACTTCACCCCACTTAGCATCCTTAGTAACCT
ACACATTATAAACCAAGTGAACCCATACTAATAGTGGGAATGTCACATGC
ATATCCACATTTAGTGATAGGG

Another sample:

GAAAGAGGAGCCGGCGTAGGTTTGGTTGAAGGAGCAGGTGCctGTTCCTGTGGCGGGGCaggcaaGcCctcggaCCTGACCGCattGGGGTACG
GAGCAGTCCAATGGGccGTAGCTGGTGGAGGCTTTGGGGGAGAAGGTGGtgtcGGAGCagccGGTGCAGCCGGAGCATGGGACGAAGGCCTCGT
CGGTGCTGGTGTCCAAAACCATGAACAAAAGTTGACcggGGGTTCCGAGTTTTGCCCTGACGACgtagtTACCGATGTTGAAGGCTTGGCCGGA
AGCGATTGGGGCGGCGGAGACGGTCTTCTGGCCCAATAAGGTGgacaggTACCTGACCCGGAGCGGGTCTTTTGAGGCCATGTCGACGATCCTG
GTGTCCCACGAGTCTACCTTGGGTGGCTTGAACGGTGAGCATTTGCTGTagaCCGGAATGACGTTGAGGTCCGACTCATCTGGTTGAGCCCCAC
ATGGGTCAGTGGCATTGCCACTCATCACCCATACTACACACAAAAATACCCCAATGCCCAACttagcATCCATTGTTGCTAACTTTCTGGTAGC
TATTACAGTgGTTGgtgTGCATGCATG

Homology Search