C3H Genomic sequences

Minimum number of tobacco C3H genes: 69

Count of tobacco C3H sequences: 71

Pfam accession: zf-CCCH

SHOULD possess zf-CCCH domain but SHOULD NOT possess PHD SNF2_N zf-C2H2 domains

Zinc finger domains are thought to be involved in DNA-binding, and exist as different types, depending on the positions of the cysteine residues. Proteins containing zinc finger domains of the C-x8-C-x5-C-x3-H type include zinc finger proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors. It has been shown that different CCCH zinc finger proteins interact with the 3' untranslated region of various mRNA. This type of zinc finger is very often present in two copies.

Many of the proteins are C3HC4 RING finger proteins.

PEI encodes an Arabidopsis protein containing a Cys3His zinc finger domain associated with a number of animal and fungal transcription factors. In situ hybridization results showed that PEI1 is expressed throughout the embryo from globular to late cotyledon stage.

Papers

Li, Z; Thomas, TL. PEI1, an embryo-specific zinc finger protein gene required for heart-stage embryo formation in Arabidopsis. Plant Cell 1998. 10(3):383-98 PMID: 9501112



Number of contigs: 54

Number of singlets: 19

Number of N terminal (half domain) – 8

Number of C terminal (half domain) – 2

Number of full – 61

Total minimum number – 69




Search sequences and info


Transcription factor sequences
Locus
Description
NCBI
C3H_1 [comment=full ] ET042301
C3H_3 [comment=half of the domain (N terminal)] ET046348
ET044255
C3H_4 [comment=full] ET046830
ET044449
C3H_5 [comment=full] ET043356
ET049016
C3H_6 [comment=full] ET049418
ET045998
C3H_7 [comment=full] ET051152
ET051578
C3H_8 [comment=half of the domain (C terminal)] ET050895
ET048756
C3H_9 [comment=full] ET044965
ET049271
C3H_10 [comment=full] ET045191
ET042392
C3H_11 [comment=full] ET051217
ET043931
C3H_12 [comment=full] ET051501
ET051425
C3H_13 [comment=full] ET045730
ET050555
C3H_14 [comment=full] ET048441
ET046188
C3H_15 [comment=full] ET045219
ET044775
C3H_16 [comment=full] ET047059
ET047058
C3H_17 [comment=full] ET042192
ET050466
C3H_18 [comment=full] ET045383
ET047562
C3H_19 [comment=full ] ET051799
ET044074
ET045517
C3H_20 [comment=full] ET050607
ET043799
ET044419
C3H_21 [comment=half of the domain(N terminal)] ET051298
ET045847
ET044004
C3H_22 [comment=full] ET041762
ET044383
ET042017
C3H_23 [comment=full] ET043807
ET050794
ET043100
C3H_24 [comment=half of the domain(N terminal)] ET048212
ET041700
ET051341
C3H_25 [comment=full] ET045117
ET046376
ET045592
C3H_26 [comment=full ] ET047404
ET051342
ET042458
C3H_28 [comment=full] ET051531
ET042566
ET043949
C3H_29 [comment=full] ET048718
ET045005
ET047323
C3H_30 [comment=full] ET051197
ET051624
ET051196
C3H_31 [comment=full] ET045933
ET041857
ET045648
ET045141
C3H_32 [comment=full] ET049946
ET045338
ET049603
ET046102
C3H_33 [comment=half of the domain(N terminal)] ET044548
ET045726
ET042811
ET045759
C3H_34 [comment=half of the domain(N terminal)] ET048084
ET046538
ET041959
ET044335
C3H_35 [comment=full] ET049350
ET049342
ET050220
ET050668
ET045347
C3H_36 [comment=full] ET046526
ET046534
ET042501
ET044932
ET048586
C3H_37 [comment=full] ET048506
ET050108
ET045701
ET042169
ET042570
C3H_38 [comment=full] ET043053
ET043052
ET051029
ET044929
ET048599
C3H_39 [comment=full] ET047680
ET043709
ET047679
ET050206
ET045888
C3H_40 [comment=half of the domain(N terminal)] ET048510
ET050411
ET046751
ET047530
ET047529
C3H_41 [comment=full] ET043324
ET047461
ET045944
ET050481
ET049006
C3H_42 [comment=full] ET046205
ET042903
ET045296
ET049707
ET046525
C3H_43 [comment=full] ET048800
ET047846
ET048801
ET048799
ET045334
C3H_44 [comment=full] ET046555
ET049295
ET043849
ET045775
ET047448
ET045444
C3H_45 [comment=half of the domain(N terminal)] ET045315
ET047584
ET045578
ET045633
ET043362
ET047585
C3H_46 [comment=full] ET050926
ET046811
ET045185
ET049601
ET047641
ET043999
ET043819
C3H_47 [comment=full] ET049729
ET051093
ET043026
ET046712
ET049320
ET051736
ET051092
C3H_48 [comment=full] ET044828
ET045009
ET045804
ET044827
ET048515
ET051070
ET050678
C3H_49 [comment=full] ET047208
ET041900
ET046244
ET049980
ET042868
ET043701
ET051359
ET042869
C3H_50 [comment=full] ET048487
ET044963
ET045681
ET045951
ET044069
ET051473
ET051476
ET046331
C3H_51 [comment=full] ET051033
ET048035
ET051108
ET047617
ET049061
ET049323
ET047503
ET047086
ET051633
C3H_52 [comment=full] ET044268
ET046077
ET050667
ET044227
ET046085
ET042272
ET044267
ET045390
ET042759
C3H_53 [comment=full] ET042062
ET048663
ET047164
ET048662
ET045669
ET047554
ET050448
ET050223
ET049681
ET047510
ET042266
C3H_54 [comment=full] ET042075
ET045925
ET043369
ET045752
ET048251
ET051150
ET044058
ET050598
ET050327
ET045924
ET049305
ET042467
C3H_55 [comment=full] ET051307
C3H_56 [comment=full] ET045462
C3H_57 [comment=full] ET050839
C3H_58 [comment=full] ET049725
C3H_59 [comment=full] ET050748
C3H_60 [comment=full] ET043848
C3H_61 [comment=full] ET041769
C3H_62 [comment=full] ET045210
C3H_63 [comment=full] ET047549
C3H_64 [comment=full] ET043438
C3H_65 [comment=half of the domain (C terminal)] ET050904
C3H_66 [comment=full] ET049997
C3H_67 [comment=full] ET043578
C3H_68 [comment=full] ET045006
C3H_69 [comment=full] ET049339
C3H_70 [comment=full] ET042409
C3H_71 [comment=half of the domain (N terminal)] ET044996
C3H_72 [comment=full] ET047450
C3H_73 [comment=full] ET050365


Tobacco published genes related to transcription factor family C3H
Family Genbank ID Name
Authors of this site:

Paul J Rushton
Marta T. Bokowiec
Xianfeng (Jeff) Chen
Thomas (Tom) W Laudeman
Jennifer F. Brannock
Michael P. Timko

Contact:

pr8y@virginia.edu