NAC Genomic sequences NAC Phylogeny file NAC Phylogeny file with bootstrap NAC Phylogeny JPEG NAC Phylogeny PDF

Minimum number of tobacco NAC genes: 152

Count of tobacco NAC sequences: 203

Pfam accession: NAM

SHOULD possess NAM domain

The NAC (NAM, ATAF1,2, CUC2) gene family is one of the largest families of plant specific transcription factors . It’s members have been implicated in regulating diverse processes including flower development and reproduction, defence, abiotic stress responses and responses to hormones . The first NAC gene to be described was no apical meristem (NAM) from petunia . Plants harbouring this mutation lack a shoot apical meristem, as do plants with mutations in both CUP-SHAPED COTYLEDON 2 (CUC2) and CUC1. NAC1 plays a role in lateral root formation and auxin signaling and TIP functions in a resistance response pathway and interacts with the turnip crinkle virus capsid protein inducing a hypersensitive response . The NAC family members are defined by the presence of the NAC domain, a conserved DNA-binding domain that appears to have no known close structural homologues . The NAC domain is found in the N-terminal region of NAC proteins and X-ray crystallography show that it consists of a twisted anitparallel -sheet that packs against an N-terminal -helix on one side and a short helix on the other side . As well as DNA binding, the NAC domain also appears to be involved in dimerisation and NAC proteins have been shown to homo- and heterodimerise .

Papers

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 2005. 10(2):79-87 PMID: 15708345

Ooka, H; Satoh, K; Doi, K; Nagata, T; Otomo, Y; Murakami, K; Matsubara, K; Osato, N; Kawai, J; Carninci, P; Hayashizaki, Y; Suzuki, K; Kojima, K; Takahara, Y; Yamamoto, K; Kikuchi, S. Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res. 2003. 10(6):239-47 PMID: 15029955

Xie, Q; Frugis, G; Colgan, D; Chua, NH. Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. Genes Dev. 2000. 14(23):3024-36 PMID: 11114891

Duval M, Hsieh TF, Kim SY, Thomas TL Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily. Plant Mol Biol. 2002 Sep;50(2):237-48. PMID: 12175016



Number of contigs: 180

Number of singlets: 27

Number of A and B domains – 53

Number of C domains – 52

Number of full – 98

Total minimum number - 152 (151 + TERN – published NAC gene)




Search sequences and info


Transcription factor sequences
Locus
Description
NCBI
NAC_1 ET041949
NAC_2 ET043870
NAC_3 ET043962
NAC_4 ET048631
NAC_5 ET051864
NAC_7 ET051376
NAC_8 ET047169
NAC_9 ET043006
NAC_10 ET041676
NAC_11 ET049988
NAC_12 ET044322
NAC_13 ET050266
NAC_14 ET050763
NAC_15 ET047307
ET047106
NAC_16 ET042318
ET049501
NAC_17 ET046816
ET048459
NAC_18 ET051558
ET048488
NAC_20 ET049106
ET048942
NAC_21 ET050293
ET049451
NAC_22 ET051235
ET043225
NAC_23 ET051689
ET045209
NAC_24 ET050784
ET050785
NAC_25 ET050751
ET044905
NAC_26 ET047088
ET043347
NAC_27 ET041855
ET041856
NAC_28 ET048408
ET043666
NAC_29 ET042155
ET042156
NAC_30 ET051668
ET051669
NAC_31 ET048746
ET048608
NAC_32 ET049193
ET045562
NAC_33 ET046979
ET048387
NAC_34 ET046770
ET051426
NAC_35 ET050120
ET048595
NAC_36 ET051276
ET045577
NAC_37 ET049987
ET044462
NAC_38 ET048709
ET047346
NAC_39 ET046737
ET043672
NAC_40 ET047269
ET044609
NAC_41 ET047421
ET045583
NAC_43 ET043420
ET050040
NAC_44 ET048999
ET046924
NAC_45 ET047349
ET047194
NAC_46 ET049907
ET043191
NAC_47 ET050140
ET044836
NAC_48 ET042101
ET045409
NAC_49 ET043065
ET043064
NAC_50 ET048299
ET048300
NAC_51 ET049319
ET042974
NAC_52 ET049166
ET048878
NAC_53 ET042483
ET046419
NAC_54 ET042545
ET046548
ET048988
NAC_55 ET042816
ET049301
ET044192
NAC_56 ET043614
ET043453
ET046511
NAC_57 ET044962
ET049660
ET041687
NAC_58 ET048775
ET049675
ET046991
NAC_59 ET043817
ET051130
ET049321
NAC_60 ET046723
ET050707
ET046724
NAC_61 ET044870
ET049815
ET047283
NAC_62 ET043707
ET042752
ET043708
NAC_63 ET046367
ET043400
ET048685
NAC_64 ET050005
ET051379
ET046325
NAC_65 ET045606
ET049482
ET044468
NAC_66 ET046491
ET044915
ET050743
NAC_67 ET051515
ET046468
ET049265
NAC_68 ET047120
ET047371
ET046130
NAC_69 ET043711
ET041683
ET049322
NAC_70 ET042655
ET043305
ET043843
NAC_71 ET044400
ET044993
ET042600
NAC_72 ET046179
ET042449
ET042450
NAC_73 ET044924
ET051075
ET045259
NAC_74 ET047883
ET050858
ET043538
NAC_75 ET047775
ET047776
ET051024
NAC_76 ET044822
ET050898
ET048482
NAC_77 ET049337
ET045443
ET049338
NAC_78 ET051266
ET043442
ET043415
NAC_79 ET049924
ET046843
ET050774
NAC_80 ET051754
ET043592
ET046731
NAC_81 ET045137
ET045179
ET045178
NAC_82 ET049313
ET043565
ET050445
NAC_83 ET049870
ET049196
ET048777
NAC_84 ET051613
ET043408
ET048339
NAC_85 ET047778
ET048630
ET042925
NAC_86 ET041887
ET041888
ET044112
NAC_87 ET049245
ET043854
ET046705
NAC_88 ET045846
ET049329
ET047041
ET046953
NAC_89 ET045316
ET044305
ET045317
ET043058
NAC_90 ET051025
ET051026
ET050906
ET046370
NAC_91 ET051639
ET049370
ET049369
ET049371
NAC_92 ET049964
ET046100
ET045330
ET050879
NAC_93 ET048275
ET049656
ET050822
ET051887
NAC_94 ET048493
ET049172
ET042207
ET047692
NAC_95 ET044207
ET051650
ET045165
ET044193
NAC_96 ET049604
ET047464
ET051709
ET044256
NAC_97 ET043418
ET045189
ET050405
ET050859
NAC_98 ET045307
ET044572
ET051729
ET044573
NAC_99 ET050565
ET042354
ET051502
ET050089
NAC_100 ET043702
ET048557
ET051770
ET049766
NAC_101 ET045325
ET050734
ET044528
ET045324
NAC_102 ET043439
ET049299
ET048210
ET050198
NAC_103 ET043769
ET045001
ET049797
ET050128
NAC_104 ET046590
ET048380
ET047941
ET051421
NAC_105 ET047284
ET048038
ET042964
ET043447
NAC_106 ET048598
ET042343
ET042609
ET048609
ET042608
NAC_107 ET051101
ET051100
ET044515
ET051271
ET051270
NAC_108 ET050054
ET042604
ET049426
ET050055
ET044396
NAC_109 ET042580
ET049992
ET050064
ET049991
ET048836
NAC_110 ET050527
ET046547
ET050160
ET047033
ET047032
NAC_111 ET051751
ET046772
ET041674
ET051752
ET046502
NAC_112 ET042103
ET049146
ET042102
ET051016
ET049328
NAC_113 ET051611
ET045166
ET045364
ET048372
ET050944
NAC_114 ET042095
ET044595
ET049695
ET042094
ET049053
NAC_115 ET049175
ET051782
ET051555
ET047430
ET046626
NAC_116 ET049010
ET046604
ET049704
ET042844
ET044555
NAC_117 ET047038
ET042642
ET051693
ET049008
ET047039
NAC_118 ET051144
ET045348
ET043539
ET045238
ET045237
NAC_119 ET047824
ET046786
ET042916
ET047825
ET046787
NAC_120 ET051290
ET044286
ET044287
ET042913
ET046258
NAC_121 ET044047
ET047521
ET045774
ET047813
ET045702
NAC_122 ET049437
ET049805
ET049804
ET050195
ET050659
NAC_123 ET047151
ET048751
ET048750
ET048752
ET051608
NAC_124 ET044011
ET050119
ET045337
ET043292
ET044012
NAC_125 ET047720
ET044938
ET049876
ET051570
ET044503
NAC_126 ET049176
ET051514
ET050786
ET050432
ET051309
NAC_127 ET043416
ET043877
ET043650
ET042734
ET043464
ET044587
NAC_128 ET049309
ET047921
ET046227
ET044851
ET049310
ET046707
NAC_129 ET046958
ET043654
ET043926
ET047380
ET050166
ET043075
NAC_130 ET048322
ET045266
ET046923
ET048998
ET045264
ET045265
NAC_131 ET048443
ET051640
ET042046
ET047055
ET047056
ET048903
NAC_132 ET045607
ET049541
ET051586
ET044596
ET045608
ET051587
NAC_133 ET048319
ET046078
ET049449
ET051212
ET041865
ET051213
NAC_134 ET049477
ET051829
ET051047
ET046655
ET043796
ET050739
NAC_135 ET043749
ET045795
ET045794
ET042936
ET042935
ET043750
NAC_136 ET046582
ET051748
ET042240
ET042347
ET047533
ET046581
NAC_137 ET044135
ET050701
ET043575
ET050284
ET050831
ET050702
NAC_138 ET051076
ET047755
ET046400
ET045404
ET045773
ET046399
NAC_139 ET050158
ET042812
ET042813
ET049374
ET049372
ET046202
NAC_140 ET042568
ET044128
ET045735
ET045530
ET045293
ET045736
NAC_141 ET047407
ET046530
ET043917
ET048142
ET051791
ET045168
NAC_142 ET044752
ET049494
ET050599
ET048321
ET050218
ET045725
NAC_143 ET051649
ET049031
ET051838
ET047853
ET048556
ET049032
NAC_144 ET046711
ET042934
ET042933
ET046710
ET045932
ET042932
NAC_145 ET049105
ET051304
ET047384
ET048106
ET042587
ET047647
NAC_146 ET051468
ET043569
ET044204
ET050130
ET042988
ET042989
ET044220
NAC_147 ET051145
ET044339
ET048802
ET044340
ET051358
ET050462
ET050382
NAC_148 ET050285
ET049775
ET046662
ET043275
ET050401
ET046661
ET048107
NAC_149 ET049940
ET043825
ET042797
ET044024
ET051569
ET051740
ET046797
NAC_150 ET044969
ET048855
ET044534
ET048078
ET043741
ET046403
ET044535
NAC_151 ET051300
ET044310
ET048641
ET045547
ET045555
ET051299
ET045546
NAC_152 ET051415
ET049777
ET049560
ET051416
ET049778
ET049318
ET046267
NAC_153 ET048059
ET047822
ET049325
ET048060
ET050499
ET043491
ET048405
NAC_154 ET046942
ET048871
ET044474
ET046941
ET047606
ET042471
ET043151
ET042470
NAC_155 ET041807
ET051053
ET042260
ET042543
ET051551
ET044504
ET050353
ET042544
NAC_156 ET046284
ET044768
ET042116
ET050323
ET045495
ET046715
ET044767
ET043626
NAC_157 ET051792
ET046485
ET044684
ET051469
ET051781
ET051865
ET045582
ET046486
NAC_158 ET049573
ET044973
ET046734
ET047273
ET047272
ET042344
ET044185
ET049574
NAC_159 ET044366
ET044984
ET045536
ET045535
ET044826
ET044367
ET042040
ET049796
NAC_160 ET048420
ET047276
ET041688
ET051036
ET049137
ET048499
ET051205
ET041936
NAC_161 ET043219
ET051419
ET046701
ET046470
ET045281
ET045280
ET043220
ET046235
ET046702
NAC_162 ET046279
ET047127
ET043466
ET045427
ET046280
ET044312
ET043467
ET047128
ET045426
NAC_163 ET050369
ET047849
ET051234
ET049267
ET049125
ET043760
ET046237
ET049165
ET050368
NAC_164 ET050864
ET050863
ET047840
ET043557
ET043031
ET048520
ET047841
ET046648
ET048062
NAC_165 ET049951
ET043300
ET047310
ET044711
ET048808
ET050884
ET048793
ET044710
ET049950
NAC_166 ET048882
ET051338
ET043295
ET048583
ET044477
ET048584
ET046993
ET048881
ET044476
ET051339
NAC_167 ET046318
ET044417
ET042951
ET050281
ET043747
ET042700
ET044418
ET046319
ET042822
ET042952
NAC_168 ET050655
ET048727
ET043135
ET051622
ET042938
ET044401
ET044187
ET041879
ET044723
ET044722
NAC_169 ET051331
ET046709
ET043189
ET044557
ET046692
ET048634
ET046691
ET048635
ET044558
ET049114
NAC_170 ET046483
ET047952
ET049712
ET049629
ET044236
ET042562
ET043766
ET044581
ET042264
ET042265
NAC_171 ET050461
ET049164
ET043808
ET046506
ET050143
ET050399
ET044160
ET042330
ET048837
ET046507
NAC_172 ET042751
ET042750
ET051374
ET043806
ET051165
ET051625
ET048124
ET043102
ET051679
ET047480
NAC_173 ET044448
ET046668
ET049260
ET051784
ET044928
ET048088
ET046666
ET046667
ET042864
ET042865
NAC_174 ET045769
ET048131
ET043714
ET048957
ET045253
ET042290
ET047538
ET045768
ET048130
ET050424
ET045793
NAC_175 ET046489
ET043030
ET043983
ET043029
ET044668
ET049222
ET049090
ET051362
ET051360
ET044669
ET043982
ET050747
NAC_176 ET048219
ET051609
ET042312
ET042310
ET042309
ET042311
ET050379
ET041799
ET042842
ET043710
ET049640
ET042433
NAC_177 ET043566
ET043648
ET049415
ET051032
ET043774
ET046618
ET042019
ET042020
ET043984
ET042210
ET043978
ET051031
ET051813
ET047910
NAC_178 ET050230
ET046613
ET045081
ET045080
ET047135
ET046614
ET051317
ET045082
ET044526
ET050231
ET049070
ET047982
ET043113
ET049808
NAC_179 ET044360
ET050918
ET043560
ET046900
ET047629
ET048272
ET044901
ET044899
ET050917
ET044663
ET044900
ET042438
ET050618
ET046276
ET042406
ET046901
NAC_180 ET042685
ET050361
ET044115
ET043008
ET051204
ET049122
ET051203
ET042684
ET043862
ET049850
ET041941
ET047379
ET041940
ET050056
ET046242
ET051068
ET051069
ET046890
ET043954
ET047476
ET044622
NAC_182 ET048453
NAC_183 ET042038
NAC_184 ET048898
NAC_185 ET043023
NAC_186 ET044923
NAC_187 ET041670
NAC_188 ET050384
NAC_189 ET043694
NAC_190 ET043718
NAC_191 ET048972
NAC_192 ET050561
NAC_193 ET050716
NAC_194 ET046231
NAC_195 ET046518
NAC_196 ET045336
NAC_197 ET045772
NAC_198 ET043956
NAC_199 ET050112
NAC_200 ET047891
NAC_201 ET042803
NAC_202 ET049162
NAC_203 ET049248
NAC_204 ET046954
NAC_206 ET042776
NAC_207 ET048501
NAC_208 ET048594


Tobacco published genes related to transcription factor family NAC
Family Genbank ID Name
NAC AB021178 TERN
Authors of this site:

Paul J Rushton
Marta T. Bokowiec
Xianfeng (Jeff) Chen
Thomas (Tom) W Laudeman
Jennifer F. Brannock
Michael P. Timko

Contact:

pr8y@virginia.edu