SBP Genomic sequences

Minimum number of tobacco SBP genes: 27

Count of tobacco SBP sequences: 37

Pfam accession: SBP

SHOULD possess SBP domain

The Arabidopsis thaliana SPL gene family represents a group of structurally diverse genes encoding putative transcription factors found apparently only in plants. The distinguishing characteristic of the SPL gene family is the SBP-box encoding a conserved protein domain of 76 amino acids in length, the SBP-domain, which is responsible for the interaction with DNA. We present here characterisation of 12 members of the SPL gene family. These genes show highly diverse genomic organisations and are found scattered over the Arabidopsis genome. Some SPL genes are constitutively expressed, while transcriptional activity of others is under developmental control. Based on phylogenetic reconstruction, gene structure and expression patterns, they can be divided into subfamilies. In addition to the Arabidopsis SPL genes, we isolated and determined the sequences of three SBP-box genes from Antirrhinum majus and seven from Zea mays.

Papers

Klein, J; Saedler, H; Huijser, P. A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet. 1996. 250(1):7-16 PMID: 8569690

Cardon, G; Höhmann, S; Klein, J; Nettesheim, K; Saedler, H; Huijser, P. Molecular characterisation of the Arabidopsis SBP-box genes. Gene 1999. 237(1):91-104 PMID: 10524240



Number of contigs :30

Number of singlets:7

SBP5 is not a real hit and so there are 36 hits.

Number of N terminal – 18

Number of C terminal – 9

Number of full – 9

Total minimum number – 27




Search sequences and info


Transcription factor sequences
Locus
Description
NCBI
SBP_1 ET045478
SBP_2 ET051067
ET050727
SBP_3 ET047199
ET050909
SBP_4 ET050123
ET049150
SBP_5
SBP_6 ET041930
ET047391
SBP_7 ET051172
ET051171
SBP_8 ET049149
ET043519
SBP_9 ET049971
ET051654
SBP_10 ET046971
ET046685
SBP_11 ET049167
ET043359
SBP_12 ET043210
ET048433
ET044968
SBP_13 ET049945
ET051517
ET043518
SBP_14 ET049721
ET050283
ET047057
SBP_15 ET042705
ET042705
ET042706
SBP_16 ET043132
ET043131
ET043133
SBP_17 ET041707
ET051058
ET041708
SBP_18 ET043866
ET042758
ET045679
ET050842
SBP_19 ET041798
ET044801
ET044334
ET044019
SBP_20 ET043791
ET051146
ET049708
ET043159
SBP_21 ET048959
ET047482
ET044602
ET050394
SBP_22 ET043895
ET043996
ET050371
ET043815
ET050477
ET050372
SBP_23 ET044861
ET043976
ET043231
ET048151
ET045734
ET045841
SBP_24 ET046631
ET045806
ET044077
ET042348
ET049937
ET042349
SBP_25 ET047639
ET045907
ET051750
ET050997
ET050996
ET049000
ET048241
SBP_26 ET050550
ET050479
ET045313
ET046868
ET050549
ET050480
ET046214
SBP_27 ET046873
ET042049
ET046823
ET047217
ET047025
ET047216
ET044384
ET047024
SBP_28 ET051430
ET044634
ET049227
ET046758
ET046589
ET047178
ET051429
ET044633
SBP_29 ET050642
ET048163
ET043716
ET044244
ET048713
ET050689
ET041944
ET041945
ET043200
ET046002
SBP_30 ET051697
ET045512
ET045994
ET045993
ET044586
ET045255
ET050976
ET049276
ET041908
ET050867
ET050868
SBP_31 ET047871
SBP_32 ET047334
ET047335
SBP_33 ET047847
SBP_34 ET046990
SBP_35 ET045667
ET047288
SBP_36 ET044467
SBP_37 ET043242
ET043241


Tobacco published genes related to transcription factor family SBP
Family Genbank ID Name
Authors of this site:

Paul J Rushton
Marta T. Bokowiec
Xianfeng (Jeff) Chen
Thomas (Tom) W Laudeman
Jennifer F. Brannock
Michael P. Timko

Contact:

pr8y@virginia.edu