bHLH Genomic sequences bHLH Phylogeny file bHLH Phylogeny file with bootstrap bHLH Phylogeny JPEG bHLH Phylogeny PDF

Minimum number of tobacco bHLH genes: 190

Count of tobacco bHLH sequences: 191

Pfam accession: HLH

SHOULD possess HLH domain

The basic helix-loop-helix (bHLH) transcription factors form one of the largest families of transcription factors in plants . The bHLH domain is approximately 60 amino acids long and contains two functionally distinct regions . Typically, there are 18 hydrophilic and basic amino acids at the N-terminus, followed by two regions of hydrophobic residues predicted to form amphipathic -helices separated by an intervening loop . These -helices can interact with other proteins, allowing the formation of homodimers or heterodimers with MYB, bHLH, WD40 or other proteins . The basic region determines the DNA binding activity of the protein . A small number of bHLH proteins do not bind DNA, whereas the other bHLHs can be subdivided into two categories: the E Box binders (CANNTG) and the G box binders (CACGTG). The subdivision is based on the presence or absence of Glu-13 and Arg-16 in the basic region .

In Zea mays a group of bHLH genes (R, B, Lc, Sn and R-ch Hopi) are required for the production of the purple anthocyanin pigments . These genes interact with the products of the R2R3MYB proteins C1 and P and together control pigmentation. bHLH/MYB complexes are also involved in trichome development in Arabidopsis through the interaction of the bHLH protein GLABRA3 and the R2R3MYB protein GLABROUS1 . One of most important roles of bHLH proteins in plants is in light sensing and studies have shown that related bHLHs play key roles in phytochrome signaling . The bHLHs involved in light signaling are found in subgroup E and several specifically interact with light-activated phytochrome. These bHLH proteins are called phytochrome interacting factors (PIFs) or phytochrome interacting factor-like (PILs). They vary in their specificity for the phytochromes phyA-E and primarily act as negative regulators of phytochrome signaling.

Phylogenetic analysis of the bHLH family is considerably more difficult than for most of the other families. This is illustrated by two recent publications, that sought to analyse the complete bHLH gene family in Arabidopsis . Using slightly different search strategies, Toledo-Ortiz and co-workers reported the discovery of 147 bHLH genes, whereas Heim and co-workers reported the discovery of 133 genes. Both groups then cooperated in producing a combined dataset and arrived at a final total of 162 bHLH genes . There were several reasons for these problems and some became apparent when we studied the bHLH family in tobacco. One major problem is that the bHLH genes are relatively divergent and there are disagreements as to what exactly constitutes a bHLH domain. This resulted in no single search ever isolating all 162 Arabidopsis genes . Another problem is the presence of up to three introns in many bHLH domains, particularly very short introns in the loop domain. This was a significant source of false negatives in the Arabidopsis analyses and was also a problem with the tobacco gene family.

Papers

Toledo-Ortiz G, Huq E, Quail PH. The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell. 2003 Aug;15(8):1749-70 PMID: 12897250

Buck, MJ; Atchley, WR. Phylogenetic analysis of plant basic helix-loop-helix proteins. J. Mol. Evol. 2003 56(6):742-50 PMID: 12911037

Heim, MA; Jakoby, M; Werber, M; Martin, C; Weisshaar, B; Bailey, PC. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol. 2003 20(5):735-47 PMID: 12679534

Littlewood, TD; Evan, GI. Transcription factors 2: helix-loop-helix. Protein Profile 1995 2(6):621-702 PMID: 7553065

Massari, ME; Murre, C. Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms. Mol. Cell. Biol. 2000 20(2):429-40 PMID: 10611221

Quattrocchio, F; Wing, JF; van der Woude, K; Mol, JN; Koes, R. Analysis of bHLH and MYB domain proteins: species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant J. 1998 13(4):475-88 PMID: 9680994

Bailey, PC; Martin, C; Toledo-Ortiz, G; Quail, PH; Huq, E; Heim, MA; Jakoby, M; Werber, M; Weisshaar, B. Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell 2003. 15(11):2497-502 PMID: 14600211



Heim, M.A., Jakoby, M., Werber, M., Martin, C., Weisshaar, B., and Bailey, P.C. The basic helix-loop-helix transcription factor family in plants: A genome-wide study of protein structure and functional diversity. MOLECULAR BIOLOGY AND EVOLUTION 20, 735-747 2003

Toledo-Ortiz, G., Huq, E., and Quail, P.H. The Arabidopsis basic/helix-loop-helix transcription factor family. PLANT CELL 15, 1749-1770 2003

Quail, P.H. Phytochrome photosensory signalling networks. NATURE REVIEWS MOLECULAR CELL BIOLOGY 3, 85-93 2002

Massari, M.E., and Murre, C. Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms. MOLECULAR AND CELLULAR BIOLOGY 20, 429-440 2000

Payne, C.T., Zhang, F., and Lloyd, A.M. GL3 encodes a bHLH protein that regulates trichome development in arabidopsis through interaction with GL1 and TTG1. GENETICS 156, 1349-1362 2000

Hu, J.P., Anderson, B., and Wessler, S.R. Isolation and characterization of rice R genes: Evidence for distinct evolutionary paths in rice and maize. GENETICS 142, 1021-1031 1996

Murre, C., Bain, G., Vandijk, M.A., Engel, I., Furnari, B.A., Massari, M.E., Matthews, J.R., Quong, M.W., Rivera, R.R., and Stuiver, M.H. Structure and Function of Helix-Loop-Helix Proteins. Biochimica Et Biophysica Acta-Gene Structure and Expression 1218, 129-135 1994

Murre, C., McCaw, P.S., Vaessin, H., Caudy, M., Jan, L.Y., Jan, Y.N., Cabrera, C.V., Buskin, J.N., Hauschka, S.D., Lassar, A.B., Weintraub, H., and Baltimore, D. Interactions between Heterologous Helix-Loop-Helix Proteins Generate Complexes That Bind Specifically to a Common DNA-Sequence. CELL 58, 537-544 1989

Number of contigs: 156

Number of singlets: 37

Number of N terminal – 2

Number of C terminal – 20

Number of full – 169

There is one published bHLH gene that did not appear in the GSSs search and was added to the data set manually.

Total minimum number – 190




Search sequences and info


Transcription factor sequences
Locus
Description
NCBI
bHLH_2 [alias=my_seq.9085.Contig2] ET045457
bHLH_4 [alias=my_seq.9085.Contig4] ET045142
bHLH_35 [alias=my_seq.9085.Contig35] ET044250
bHLH_39 [alias=my_seq.9085.Contig39] ET044368
bHLH_40 [alias=my_seq.9085.Contig40] ET043512
bHLH_59 [alias=my_seq.9085.Contig59] ET043392
bHLH_72 [alias=my_seq.9085.Contig72] ET048046
ET050621
bHLH_73 [alias=my_seq.9085.Contig73] ET050484
ET042481
bHLH_75 [alias=my_seq.9085.Contig75] ET048748
ET048350
bHLH_76 [alias=my_seq.9085.Contig76] ET042682
ET043005
bHLH_77 [alias=my_seq.9085.Contig77] ET044354
ET044353
bHLH_80 [alias=my_seq.9085.Contig80] ET042165
ET046327
bHLH_82 [alias=my_seq.9085.Contig82] ET046451
ET048548
bHLH_84 [alias=my_seq.9085.Contig84] ET044409
ET043130
bHLH_85 [alias=my_seq.9085.Contig85] ET042175
ET046930
bHLH_86 [alias=my_seq.9085.Contig86] ET042567
ET042110
bHLH_87 [alias=my_seq.9085.Contig87] ET049871
ET050804
bHLH_90 [alias=my_seq.9085.Contig90] ET048410
ET048045
bHLH_91 [alias=my_seq.9085.Contig91] ET050359
ET048007
bHLH_92 [alias=my_seq.9085.Contig92] ET042079
ET042078
bHLH_93 [alias=my_seq.9085.Contig93] ET048213
ET044228
bHLH_94 [alias=my_seq.9085.Contig94] ET049952
ET046558
bHLH_100 [alias=my_seq.9085.Contig100] ET045398
ET044936
bHLH_101 [alias=my_seq.9085.Contig101] ET047938
ET049670
bHLH_104 [alias=my_seq.9085.Contig104] ET046520
ET049853
bHLH_105 [alias=my_seq.9085.Contig105] ET049488
ET050262
bHLH_108 [alias=my_seq.9085.Contig108] ET050627
ET044505
bHLH_112 [alias=my_seq.9085.Contig112] ET043148
ET047540
bHLH_113 [alias=my_seq.9085.Contig113] ET045108
ET045816
bHLH_116 [alias=my_seq.9085.Contig116] ET044677
ET050110
bHLH_123 [alias=my_seq.9085.Contig123] ET046861
ET044461
bHLH_124 [alias=my_seq.9085.Contig124] ET044688
ET045044
bHLH_125 [alias=my_seq.9085.Contig125] ET042778
ET050031
bHLH_126 [alias=my_seq.9085.Contig126] ET043355
ET042978
bHLH_127 [alias=my_seq.9085.Contig127] ET047757
ET047756
bHLH_128 [alias=my_seq.9085.Contig128] ET044786
ET050697
bHLH_129 [alias=my_seq.9085.Contig129] ET045092
ET045091
bHLH_130 [alias=my_seq.9085.Contig130] ET044414
ET049412
bHLH_131 [alias=my_seq.9085.Contig131] ET046656
ET046657
bHLH_132 [alias=my_seq.9085.Contig132] ET051527
ET047185
bHLH_133 [alias=my_seq.9085.Contig133] ET051491
ET045140
bHLH_134 [alias=my_seq.9085.Contig134] ET043134
ET049891
bHLH_135 [alias=my_seq.9085.Contig135] ET047031
ET047030
bHLH_136 [alias=my_seq.9085.Contig136] ET051113
ET050919
bHLH_137 [alias=my_seq.9085.Contig137] ET050936
ET050935
ET049935
bHLH_138 [alias=my_seq.9085.Contig138] ET050679
ET049999
ET043863
bHLH_139 [alias=my_seq.9085.Contig139] ET048245
ET043605
ET042630
bHLH_140 [alias=my_seq.9085.Contig140] ET049448
ET042806
ET049545
bHLH_141 [alias=my_seq.9085.Contig141] ET048229
ET043048
ET046191
bHLH_142 [alias=my_seq.9085.Contig142] ET043343
ET042042
ET050168
bHLH_143 [alias=my_seq.9085.Contig143] ET049731
ET044697
ET049732
bHLH_146 [alias=my_seq.9085.Contig146] ET044946
ET051803
ET044956
bHLH_147 [alias=my_seq.9085.Contig147] ET042663
ET042662
ET048187
bHLH_148 [alias=my_seq.9085.Contig148] ET048138
ET044649
ET045011
bHLH_149 [alias=my_seq.9085.Contig149] ET049892
ET049428
ET048330
bHLH_150 [alias=my_seq.9085.Contig150] ET050673
ET049223
ET050674
bHLH_151 [alias=my_seq.9085.Contig151] ET041902
ET044628
ET043761
bHLH_153 [alias=my_seq.9085.Contig153] ET042914
ET042833
ET044116
bHLH_154 [alias=my_seq.9085.Contig154] ET041982
ET051046
ET047202
bHLH_155 [alias=my_seq.9085.Contig155] ET050995
ET051159
ET050994
bHLH_156 [alias=my_seq.9085.Contig156] ET050999
ET051000
ET049208
bHLH_157 [alias=my_seq.9085.Contig157] ET049983
ET044854
ET043920
bHLH_158 [alias=my_seq.9085.Contig158] ET045513
ET046929
ET042949
bHLH_160 [alias=my_seq.9085.Contig160] ET044819
ET044820
ET048016
bHLH_161 [alias=my_seq.9085.Contig161] ET044460
ET050522
ET050523
bHLH_162 [alias=my_seq.9085.Contig162] ET045638
ET049845
ET048472
ET049846
bHLH_163 [alias=my_seq.9085.Contig163] ET047947
ET047839
ET050471
ET051846
bHLH_165 [alias=my_seq.9085.Contig165] ET042591
ET046240
ET046239
ET047230
bHLH_166 [alias=my_seq.9085.Contig166] ET045987
ET045986
ET050762
ET045988
bHLH_167 [alias=my_seq.9085.Contig167] ET043203
ET048939
ET051372
ET051248
bHLH_168 [alias=my_seq.9085.Contig168] ET044457
ET049533
ET048122
ET045240
bHLH_169 [alias=my_seq.9085.Contig169] ET043798
ET045285
ET047206
ET047203
bHLH_170 [alias=my_seq.9085.Contig170] ET043009
ET042686
ET045062
ET045061
bHLH_171 [alias=my_seq.9085.Contig171] ET051653
ET045452
ET051652
ET050634
bHLH_172 [alias=my_seq.9085.Contig172] ET044153
ET047414
ET046429
ET048658
bHLH_173 [alias=my_seq.9085.Contig173] ET051861
ET047863
ET049291
ET051878
bHLH_174 [alias=my_seq.9085.Contig174] ET048589
ET045421
ET048588
ET047357
bHLH_176 [alias=my_seq.9085.Contig176] ET044903
ET051685
ET044918
ET046695
bHLH_177 [alias=my_seq.9085.Contig177] ET047263
ET047109
ET044530
ET047108
bHLH_178 [alias=my_seq.9085.Contig178] ET042825
ET044760
ET041980
ET041671
bHLH_179 [alias=my_seq.9085.Contig179] ET046355
ET042096
ET042474
ET046356
bHLH_181 [alias=my_seq.9085.Contig181] ET045514
ET043901
ET043090
ET043091
bHLH_182 [alias=my_seq.9085.Contig182] ET044553
ET042485
ET045073
ET042480
ET045072
bHLH_183 [alias=my_seq.9085.Contig183] ET043971
ET049996
ET043788
ET045942
ET042308
bHLH_184 [alias=my_seq.9085.Contig184] ET043695
ET051737
ET044238
ET050613
ET049564
bHLH_185 [alias=my_seq.9085.Contig185] ET043223
ET042977
ET046629
ET045890
ET044288
bHLH_186 [alias=my_seq.9085.Contig186] ET042277
ET048101
ET042278
ET048277
ET048704
bHLH_187 [alias=my_seq.9085.Contig187] ET044016
ET045386
ET045602
ET045387
ET044015
bHLH_188 [alias=my_seq.9085.Contig188] ET046871
ET042375
ET047333
ET051574
ET048604
bHLH_189 [alias=my_seq.9085.Contig189] ET044896
ET045467
ET051695
ET045466
ET044897
bHLH_191 [alias=my_seq.9085.Contig191] ET049421
ET041922
ET042557
ET042555
ET041921
ET049420
bHLH_192 [alias=my_seq.9085.Contig192] ET049968
ET050412
ET044687
ET049986
ET051082
ET051083
bHLH_193 [alias=my_seq.9085.Contig193] ET047037
ET050962
ET047036
ET048073
ET042900
ET047460
bHLH_194 [alias=my_seq.9085.Contig194] ET044770
ET049549
ET046790
ET043391
ET051841
ET044769
bHLH_196 [alias=my_seq.9085.Contig196] ET045639
ET045322
ET042274
ET045858
ET045194
ET045323
bHLH_197 [alias=my_seq.9085.Contig197] ET051690
ET043693
ET045225
ET043115
ET051272
ET047714
ET047713
bHLH_198 [alias=my_seq.9085.Contig198] ET047271
ET050715
ET044342
ET044314
ET042473
ET047270
ET044341
bHLH_199 [alias=my_seq.9085.Contig199] ET048873
ET044951
ET044480
ET049270
ET043170
ET051433
ET044479
bHLH_200 [alias=my_seq.9085.Contig200] ET050172
ET042674
ET050836
ET048152
ET048415
ET042676
ET042675
bHLH_201 [alias=my_seq.9085.Contig201] ET050684
ET047731
ET049189
ET046350
ET050841
ET045600
ET050685
bHLH_202 [alias=my_seq.9085.Contig202] ET045352
ET043859
ET049576
ET045002
ET044886
ET045192
ET046462
bHLH_203 [alias=my_seq.9085.Contig203] ET048729
ET050677
ET046308
ET042133
ET042132
ET046309
ET048728
bHLH_204 [alias=my_seq.9085.Contig204] ET049872
ET045439
ET046245
ET045609
ET047616
ET042329
ET045438
ET043358
bHLH_205 [alias=my_seq.9085.Contig205] ET049386
ET046915
ET050094
ET047986
ET047880
ET046974
ET043552
ET050095
bHLH_206 [alias=my_seq.9085.Contig206] ET049535
ET043860
ET044362
ET048338
ET047504
ET042650
ET046726
ET044137
ET049399
bHLH_207 [alias=my_seq.9085.Contig207] ET048769
ET043258
ET047398
ET047317
ET047429
ET041916
ET051313
ET041915
ET047397
ET045920
bHLH_208 [alias=my_seq.9085.Contig208] ET048157
ET046107
ET043715
ET049473
ET044261
ET046654
ET044260
ET049474
ET046103
ET045861
bHLH_209 [alias=my_seq.9085.Contig209] ET049257
ET047369
ET048051
ET051378
ET051384
ET046663
ET046664
ET043137
ET044561
ET049258
ET048050
bHLH_210 [alias=my_seq.9085.Contig210] ET045454
ET048394
ET043173
ET047780
ET047779
ET045453
ET050808
ET043172
ET043294
ET048225
ET051758
bHLH_211 [alias=my_seq.9085.Contig211] ET044062
ET049263
ET047875
ET049465
ET049464
ET051455
ET042373
ET042248
ET042249
ET048951
ET044653
bHLH_212 [alias=my_seq.9085.Contig212] ET042089
ET050444
ET045464
ET050418
ET046877
ET042090
ET044041
ET042384
ET045134
ET049989
ET046899
bHLH_213 [alias=my_seq.9085.Contig213] ET046912
ET046443
ET043335
ET046269
ET044037
ET051439
ET045792
ET048331
ET043336
ET047581
ET046268
ET051440
bHLH_214 [alias=my_seq.9085.Contig214] ET045969
ET048247
ET042907
ET042908
ET045970
ET044481
ET049669
ET051243
ET042063
ET042894
ET048463
ET042477
bHLH_216 [alias=my_seq.9085.Contig216] ET045677
ET049141
ET041777
ET046055
ET043922
ET047001
ET044863
ET047740
ET046658
ET049504
ET043671
ET047278
ET047118
ET047509
ET047080
ET047081
bHLH_217 [comment=CHROMAT_FILE: CHO_OF4838xa20r1.ab1 PHD_FILE: CHO_OF4838xa20r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:24:01] ET048680
bHLH_218 [comment=CHROMAT_FILE: CHO_OF761xb18r1.ab1 PHD_FILE: CHO_OF761xb18r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:02:41] ET051645
bHLH_219 [comment=CHROMAT_FILE: CHO_OF4993xf22f1.ab1 PHD_FILE: CHO_OF4993xf22f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:33:27] ET049709
bHLH_220 [comment=CHROMAT_FILE: CHO_OF4716xf13r1.ab1 PHD_FILE: CHO_OF4716xf13r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:13:09] ET047981
bHLH_221 [comment=CHROMAT_FILE: CHO_OF4549xn04r1.ab1 PHD_FILE: CHO_OF4549xn04r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:10:42] ET047004
bHLH_222 [comment=CHROMAT_FILE: CHO_OF4624xp18f1.ab1 PHD_FILE: CHO_OF4624xp18f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:02:50] ET047531
bHLH_223 [comment=CHROMAT_FILE: CHO_OF3593xg12r1.ab1 PHD_FILE: CHO_OF3593xg12r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:28:57] ET044369
bHLH_224 [comment=CHROMAT_FILE: CHO_OF3149xk04f1.ab1 PHD_FILE: CHO_OF3149xk04f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:15:18] ET043444
bHLH_225 [comment=CHROMAT_FILE: CHO_OF261xj15r1.ab1 PHD_FILE: CHO_OF261xj15r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:33:15] ET042855
bHLH_226 [comment=CHROMAT_FILE: CHO_OF4961xi05f1.ab1 PHD_FILE: CHO_OF4961xi05f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:29:14] ET049443
bHLH_227 [comment=CHROMAT_FILE: CHO_OF4578xo07f1.ab1 PHD_FILE: CHO_OF4578xo07f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:00:51] ET047191
bHLH_228 [comment=CHROMAT_FILE: CHO_OF3038xe10r1.ab1 PHD_FILE: CHO_OF3038xe10r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:10:45] ET043187
bHLH_229 [comment=CHROMAT_FILE: CHO_OF4207xj04f1.ab1 PHD_FILE: CHO_OF4207xj04f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:51:57] ET045762
bHLH_230 [comment=CHROMAT_FILE: CHO_OF183xk18f1.ab1 PHD_FILE: CHO_OF183xk18f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:18:09] ET042443
bHLH_231 [comment=CHROMAT_FILE: CHO_OF372xf16r1.ab1 PHD_FILE: CHO_OF372xf16r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:41:00] ET044825
bHLH_232 [comment=CHROMAT_FILE: CHO_OF236xm11f1.ab1 PHD_FILE: CHO_OF236xm11f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:20:02] ET042735
bHLH_233 [comment=CHROMAT_FILE: CHO_OF4575xi15r1.ab1 PHD_FILE: CHO_OF4575xi15r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:11:28] ET047172
bHLH_234 [comment=CHROMAT_FILE: CHO_OF4369xa18f1.ab1 PHD_FILE: CHO_OF4369xa18f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:43:24] ET046345
bHLH_235 [comment=CHROMAT_FILE: CHO_OF4369xb06f1.ab1 PHD_FILE: CHO_OF4369xb06f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:43:08] ET046346
bHLH_236 [comment=CHROMAT_FILE: CHO_OF5020xn20r1.ab1 PHD_FILE: CHO_OF5020xn20r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:35:58] ET049919
bHLH_237 [alias=my_seq.24407.Contig1] [note=From new searches] ET050115
bHLH_238 [alias=my_seq.24407.Contig2] [note=From new searches] ET049187
bHLH_239 [alias=my_seq.24407.Contig4] [note=From new searches] ET050428
bHLH_240 [alias=my_seq.24407.Contig5] [note=From new searches] ET049861
bHLH_241 [alias=my_seq.24407.Contig6] [note=From new searches] ET050391
bHLH_242 [alias=my_seq.24407.Contig8] [note=From new searches] ET051902
bHLH_243 [alias=my_seq.24407.Contig9] [note=From new searches] ET047945
bHLH_244 [alias=my_seq.24407.Contig10] [note=From new searches] ET050273
ET044498
bHLH_245 [alias=my_seq.24407.Contig12] [note=From new searches] ET050121
ET050131
bHLH_246 [alias=my_seq.24407.Contig18] [note=From new searches] ET043043
ET050546
bHLH_247 [alias=my_seq.24407.Contig19] [note=From new searches] ET050488
ET050487
bHLH_248 [alias=my_seq.24407.Contig25] [note=From new searches] ET048230
ET047123
bHLH_249 [alias=my_seq.24407.Contig34] [note=From new searches] ET044970
ET048447
bHLH_250 [alias=my_seq.24407.Contig36] [note=From new searches] ET047677
ET042157
bHLH_251 [alias=my_seq.24407.Contig41] [note=From new searches] ET042018
ET051843
bHLH_252 [alias=my_seq.24407.Contig43] [note=From new searches] ET046457
ET044067
bHLH_253 [alias=my_seq.24407.Contig48] [note=From new searches] ET043597
ET042146
bHLH_254 [alias=my_seq.24407.Contig52] [note=From new searches] ET044646
ET044645
bHLH_255 [alias=my_seq.24407.Contig53] [note=From new searches] ET048218
ET042881
bHLH_256 [alias=my_seq.24407.Contig57] [note=From new searches] ET044833
ET042880
bHLH_257 [alias=my_seq.24407.Contig59] [note=From new searches] ET042899
ET051762
ET045231
bHLH_258 [alias=my_seq.24407.Contig61] [note=From new searches] ET050619
ET048947
ET048946
bHLH_259 [alias=my_seq.24407.Contig63] [note=From new searches] ET044075
ET050127
ET042451
bHLH_260 [alias=my_seq.24407.Contig64] [note=From new searches] ET048659
ET046641
ET051705
bHLH_261 [alias=my_seq.24407.Contig68] [note=From new searches] ET051371
ET047459
ET043509
bHLH_262 [alias=my_seq.24407.Contig73] [note=From new searches] ET048216
ET043146
ET048217
bHLH_263 [alias=my_seq.24407.Contig77] [note=From new searches] ET044735
ET044081
ET042127
bHLH_264 [alias=my_seq.24407.Contig79] [note=From new searches] ET043567
ET043873
ET043740
bHLH_265 [alias=my_seq.24407.Contig81] [note=From new searches] ET043556
ET049431
ET051544
bHLH_266 [alias=my_seq.24407.Contig88] [note=From new searches] ET051796
ET049174
ET044737
bHLH_267 [alias=my_seq.24407.Contig90] [note=From new searches] ET045815
ET043812
ET043810
bHLH_268 [alias=my_seq.24407.Contig92] [note=From new searches] ET042515
ET050154
ET043410
bHLH_269 [alias=my_seq.24407.Contig107] [note=From new searches] ET044858
ET042160
ET049545
ET042142
bHLH_270 [alias=my_seq.24407.Contig108] [note=From new searches] ET050000
ET049877
ET042995
ET043864
bHLH_271 [alias=my_seq.24407.Contig114] [note=From new searches] ET049724
ET041979
ET051382
ET041978
bHLH_272 [alias=my_seq.24407.Contig116] [note=From new searches] ET051571
ET045899
ET043692
ET050652
bHLH_273 [alias=my_seq.24407.Contig118] [note=From new searches] ET051221
ET046728
ET051220
ET041882
bHLH_274 [alias=my_seq.24407.Contig123] [note=From new searches] ET044142
ET049649
ET045778
ET044148
ET047694
bHLH_275 [alias=my_seq.24407.Contig129] [note=From new searches] ET050380
ET046546
ET046544
ET048714
ET043845
bHLH_276 [alias=my_seq.24407.Contig130] [note=From new searches] ET046190
ET047572
ET043312
ET047807
ET050529
bHLH_277 [alias=my_seq.24407.Contig140] [note=From new searches] ET050990
ET048434
ET044570
ET046413
ET049508
ET046545
bHLH_278 [alias=my_seq.24407.Contig142] [note=From new searches] ET043855
ET043844
ET048642
ET050077
ET045476
ET048643
bHLH_279 [alias=my_seq.24407.Contig144] [note=From new searches] ET044907
ET047103
ET049544
ET050905
ET048049
ET050437
ET050985
bHLH_280 [alias=my_seq.24407.Contig154] [note=From new searches] ET043965
ET047504
ET045156
ET045788
ET051807
ET043966
ET041729
ET046012
ET051688
bHLH_281 [alias=my_seq.24407.Contig156] [note=From new searches] ET045135
ET047122
ET047050
ET048765
ET050419
ET042383
ET050443
ET051357
ET049436
ET047327
ET046878
ET043742
ET049287
ET047051
ET045463
ET043611
ET050717
ET046899
ET049989
ET045134
ET048764
ET042384
ET046877
ET042090
ET044041
ET042089
ET050444
ET045464
ET050418
bHLH_282 [comment=CHROMAT_FILE: CHO_OF4363xm16r1.ab1 PHD_FILE: CHO_OF4363xm16r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:42:51] [note=From new searches] ET046339
bHLH_283 [comment=CHROMAT_FILE: CHO_OF3254xo16r2.ab1 PHD_FILE: CHO_OF3254xo16r2.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:23:12] [note=From new searches] ET043743
bHLH_284 [comment=CHROMAT_FILE: CHO_OF5150xg11f1.ab1 PHD_FILE: CHO_OF5150xg11f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:43:52] [note=From new searches] ET050695
bHLH_285 [comment=CHROMAT_FILE: CHO_OF4501xh16f1.ab1 PHD_FILE: CHO_OF4501xh16f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:08:49] [note=From new searches] ET046813
bHLH_286 [comment=CHROMAT_FILE: CHO_OF4174xd13f1.ab1 PHD_FILE: CHO_OF4174xd13f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:49:23] [note=From new searches] ET045576
bHLH_287 [comment=CHROMAT_FILE: CHO_OF4166xp21r1.ab1 PHD_FILE: CHO_OF4166xp21r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:50:35] [note=From new searches] ET045531
bHLH_288 [comment=CHROMAT_FILE: CHO_OF177xo07f1.ab1 PHD_FILE: CHO_OF177xo07f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:18:01] [note=From new searches] ET042407
bHLH_289 [comment=CHROMAT_FILE: CHO_OF4763xd09f1.ab1 PHD_FILE: CHO_OF4763xd09f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 12:17:15] [note=From new searches] ET048231
bHLH_290 [comment=CHROMAT_FILE: CHO_OF220xh21f1.ab1 PHD_FILE: CHO_OF220xh21f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:19:37] [note=From new searches] ET042621
bHLH_291 [comment=CHROMAT_FILE: CHO_OF3877xb07r1.ab1 PHD_FILE: CHO_OF3877xb07r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 11:35:40] [note=From new searches] ET044989
bHLH_292 [comment=CHROMAT_FILE: CHO_OF353xf17r1.ab1 PHD_FILE: CHO_OF353xf17r1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:32:38] [note=From new searches] ET044329
bHLH_293 [comment=CHROMAT_FILE: CHO_OF355xb24f1.ab1 PHD_FILE: CHO_OF355xb24f1.ab1.phd.1 CHEM: term DYE: big TIME: 2006/03/06 10:24:30] [note=From new searches] ET044337


Tobacco published genes related to transcription factor family bHLH
Family Genbank ID Name
bHLH EF051132 bHLH domain-containing
Authors of this site:

Paul J Rushton
Marta T. Bokowiec
Xianfeng (Jeff) Chen
Thomas (Tom) W Laudeman
Jennifer F. Brannock
Michael P. Timko

Contact:

pr8y@virginia.edu