>MYB-related_19  [length=982] [hit_def=] [comment=missing last 10 amino acids very divergent] [delivery_date=2007-05-03]
GTTGGCGAGTAGCCCTCAAAAGATTCCGCCATTTGTCCTGATAGAAGAAA
GGGACTGTTATAGAATGAATCTAGACATTTACTATAGGATGAATCTAGAC
ACTTATTATTGAATGAATGTAGACTCTTTCTTAGTAGTGTCCATAAATAG
CAGATTTATAAGAATCTCTTTTATTTCTTTCCTTAGTTAGCATCTGATGT
ACATGTATTTATATTGCTCACCTCTTGGAATGACAACACAAGTTATTCTT
TCTATTCCGTTCACAAAGACTAAAGTCATACCAAAAAATATAGGGAAAGA
AGAAATTTACTTCAGTATTTGATAGTATTAACAGTTACATCCCTTCAGAT
CAAGGTGGGCTATGATGTGCAGATGATTGGAAATACAACCTCTTTATGTC
AGTCCATCTGCCTACACCATACTGAGATACACCCTCCACCAACTTTAGGA
CCTCAGGGGTCGACCAATAGTTATGTTTTCTGTTTTGGTTAGCGCCTCGT
GTCTCAATCCCTGTAGTCCAATCATCTTCAGATGTAGTATTATCATTCGA
CTGGTCCGAAAGACAGCCAGAAGAATCAACTTGTGCCTCAGATAAGCATT
TGAAGGAATTCCATTGGATATGTTCTCTCCTTTTCACATGTTGAACCCTT
GGCTTTTTTCGGAAATTGAATACACTTGCAAAGGCAGTAGACGCTTTAAG
GAGCTCTTCACGACTTGCTGGTGAAAGGACTTTAGACCCTTCATTTTCAC
TCAAAACTAGAGAGCATTTCATGTCCTGGTTTTGCAAACCAAATGTTATG
TGGTGATTCAGCCATTGCTTATTCGTGACAGAAGTTTGATGTCCAAACAT
CTTACTGAACACCTCGAGTAGTCTATCAGTTGACATGTCATCAAATCCCA
GACAATTGTGATTGTCTAATCGTAGAGCATCATAATCAGATGAGTTACTT
GGATCTTTCCGAGCACCAGTGGCGGATGATAT


Pfam accession: Myb_DNA-binding

This gene has been published under the name LBM1    GenBank AB028649   PMID: 11148294

Brief BLAST results against the "ESTobacco" dataset.

TOBFAC ID Accesion E Value Bit Score Definition


Brief BLAST results against the "GenBank Protein" dataset.

TOBFAC ID Accession E Value Bit Score Definition


Component TGI GSRs via NCBI:

ET047043

ET047044

Papers related to tobacco and family MYB-related:

Suzuki K, Nishiuchi T, Nakayama Y, Ito M, Shinshi H Elicitor-induced down-regulation of cell cycle-related genes in tobacco cells PLANT CELL AND ENVIRONMENT 29 (2): 183-191 2006 PMID: 17080634

Rowland,O., Ludwig,A.A., Merrick,C.J., Baillieul,F., Tracy,F.E., Durrant,W.E., Fritz-Laylin,L., Nekrasov,V., Sjolander,K., Yoshioka,H. and Jones,J.D. Functional Analysis of Avr9/Cf-9 Rapidly Elicited Genes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9-Dependent Disease Resistance in Tomato PLANT CELL 17 (1): 295-310 2005 PMID: 15598806

McHale NA, Koning RE. PHANTASTICA regulates development of the adaxial mesophyll in Nicotiana leaves. PLANT CELL 16 (5):1251-62 2004 PMID: 15084717

Araki S, Ito M, Soyano T, Nishihama R, Machida Y Mitotic cyclins stimulate the activity of c-Myb-like factors for transactivation of G(2)/M phase-specific genes in tobacco JOURNAL OF BIOLOGICAL CHEMISTRY 279 (31): 32979-32988 2004 PMID: 15175336

Kyo,M., Hattori,S., Yamaji,N., Pechan,P. and Fukui,H. Cloning and characterization of cDNAs associated with the embryogenic dedifferentiation of tobacco immature pollen grains PLANT SCIENCE 164: 1057-1066 2003 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TBH-486BPW1-1&_user=709071&_coverDate=06%2F30%2F2003&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=bea469f86d86456acadea8f5326b36e9

Ito M, Araki S, Matsunaga S, Itoh T, Nishihama R, Machida Y, Doonan JH, Watanabe A G2/M-phase-specific transcription during the plant cell cycle is mediated by c-Myb-like transcription factors PLANT CELL 13 (8): 1891-1905 2001 PMID: 11487700

Yang,S., Sweetman,J.P., Amirsadeghi,S., Barghchi,M., Huttly,A.K., Chung,W.I. and Twell,D. Novel anther-specific myb genes from tobacco as putative regulators of phenylalanine ammonia-lyase expression PLANT PHYSIOLOGY 126 (4): 1738-1753 2001 PMID: 11500571

Sugimoto,K., Takeda,S. and Hirochika,H. MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes PLANT CELL 12 (12): 2511-2528 2000 PMID: 11148294

Payne T, Clement J, Arnold D, Lloyd A Heterologous myb genes distinct from GL1 enhance trichome production when overexpressed in Nicotiana tabacum DEVELOPMENT 126 (4): 671-682 1999 PMID: 9895315

Yang,Y. and Klessig,D.F. Isolation and characterization of a tobacco mosaic virus-inducible myb oncogene homolog from tobacco PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 93 (25): 14972-14977 1996 PMID: 8962166



Tobacco published genes related to transcription factor family MYB-related
Family Genbank ID Name PMID


Six frame translation of MYB-related_19
>MYB-related_19_1 [tobfac_id=MYB-related_19] [frame=1]
VGE*PSKDSAICPDRRKGLL*NESRHLL*DESRHLLLNECRLFLSSVHK*QIYKNLFYFF
P*LASDVHVFILLTSWNDNTSYSFYSVHKD*SHTKKYRERRNLLQYLIVLTVTSLQIKVG
YDVQMIGNTTSLCQSICLHHTEIHPPPTLGPQGSTNSYVFCFG*RLVSQSL*SNHLQM*Y
YHSTGPKDSQKNQLVPQISI*RNSIGYVLSFSHVEPLAFFGN*IHLQRQ*TL*GALHDLL
VKGL*TLHFHSKLESISCPGFANQMLCGDSAIAYS*QKFDVQTSY*TPRVVYQLTCHQIP
DNCDCLIVEHHNQMSYLDLSEHQWRMIX
>MYB-related_19_2 [tobfac_id=MYB-related_19] [frame=2]
LASSPQKIPPFVLIEERDCYRMNLDIYYRMNLDTYY*MNVDSFLVVSINSRFIRISFISF
LS*HLMYMYLYCSPLGMTTQVILSIPFTKTKVIPKNIGKEEIYFSI**Y*QLHPFRSRWA
MMCR*LEIQPLYVSPSAYTILRYTLHQL*DLRGRPIVMFSVLVSASCLNPCSPIIFRCSI
IIRLVRKTARRINLCLR*AFEGIPLDMFSPFHMLNPWLFSEIEYTCKGSRRFKELFTTCW
*KDFRPFIFTQN*RAFHVLVLQTKCYVVIQPLLIRDRSLMSKHLTEHLE*SIS*HVIKSQ
TIVIV*S*SIIIR*VTWIFPSTSGG*Y
>MYB-related_19_3 [tobfac_id=MYB-related_19] [frame=3]
WRVALKRFRHLS**KKGTVIE*I*TFTIG*I*TLIIE*M*TLS**CP*IADL*ESLLFLS
LVSI*CTCIYIAHLLE*QHKLFFLFRSQRLKSYQKI*GKKKFTSVFDSINSYIPSDQGGL
*CADDWKYNLFMSVHLPTPY*DTPSTNFRTSGVDQ*LCFLFWLAPRVSIPVVQSSSDVVL
SFDWSERQPEESTCASDKHLKEFHWICSLLFTC*TLGFFRKLNTLAKAVDALRSSSRLAG
ERTLDPSFSLKTREHFMSWFCKPNVMW*FSHCLFVTEV*CPNILLNTSSSLSVDMSSNPR
QL*LSNRRAS*SDELLGSFRAPVADDX
>MYB-related_19_4 [tobfac_id=MYB-related_19] [frame=-1]
YHPPLVLGKIQVTHLIMMLYD*TITIVWDLMTCQLIDYSRCSVRCLDIKLLSRISNG*IT
T*HLVCKTRT*NAL*F*VKMKGLKSFHQQVVKSSLKRLLPLQVYSISEKSQGFNM*KGEN
ISNGIPSNAYLRHKLILLAVFRTSRMIILHLKMIGLQGLRHEALTKTENITIGRPLRS*S
WWRVYLSMV*ADGLT*RGCISNHLHIIAHLDLKGCNC*YYQILK*ISSFPIFFGMTLVFV
NGIERITCVVIPRGEQYKYMYIRC*LRKEIKEILINLLFMDTTKKESTFIQ**VSRFIL*
*MSRFIL*QSLSSIRTNGGIF*GLLAN
>MYB-related_19_5 [tobfac_id=MYB-related_19] [frame=-2]
ISSATGARKDPSNSSDYDALRLDNHNCLGFDDMSTDRLLEVFSKMFGHQTSVTNKQWLNH
HITFGLQNQDMKCSLVLSENEGSKVLSPASREELLKASTAFASVFNFRKKPRVQHVKRRE
HIQWNSFKCLSEAQVDSSGCLSDQSNDNTTSEDDWTTGIETRGANQNRKHNYWSTPEVLK
LVEGVSQYGVGRWTDIKRLYFQSSAHHSPP*SEGM*LLILSNTEVNFFFPYIFWYDFSLC
ERNRKNNLCCHSKR*AI*IHVHQMLTKERNKRDSYKSAIYGHY*ERVYIHSIISV*IHPI
VNV*IHSITVPFFYQDKWRNLLRATRQX
>MYB-related_19_6 [tobfac_id=MYB-related_19] [frame=-3]
IIRHWCSERSK*LI*L*CSTIRQSQLSGI**HVN**TTRGVQ*DVWTSNFCHE*AMAESP
HNIWFAKPGHEMLSSFE*K*RV*SPFTSKS*RAP*SVYCLCKCIQFPKKAKGSTCEKERT
YPMEFLQMLI*GTS*FFWLSFGPVE**YYI*R*LDYRD*DTRR*PKQKT*LLVDP*GPKV
GGGCISVWCRQMD*HKEVVFPIICTS*PTLI*RDVTVNTIKY*SKFLLSLYFLV*L*SL*
TE*KE*LVLSFQEVSNINTCTSDAN*GKK*KRFL*ICYLWTLLRKSLHSFNNKCLDSSYS
KCLDSFYNSPFLLSGQMAESFEGYSPT


Contact:

pr8y@virginia.edu