>MYB-related_52  [length=905] [hit_def=SANT/MYB domain protein [Lycopersicon esculentum]] [comment=full length] [delivery_date=2007-05-03]
TAACCGCTACACCAGACCCTAAGGTACCCTAGTTTTGACTCCCTTTATAA
GCAGCCCTTTGCCAGTTCTTTTTTCACAAAACAGCTCAAAGCTTAATTAC
TCTCCTCTGCTTGCTCTCTTCTTCTTGTTAGCTCTTCCTTTCAACAAATT
GCCTTCCTTTTTCCGATATATACATATATCTTGTAATTAGCAAATAGAGA
TCGAATATGAGCTCAATGTCGTCTCAACATGGGTCTGGCTCCTGGACAGC
AAAACAGAACAAGGCCTTTGAGAAGGCATTGGCAGTGTATGACAAAGACA
CTTGTGATCGTTGGTCCAATGTTGCCAAAGCAGTTGGAGGAAAAACAGCT
GAAGAGGTGAAACGACACTATGAAATCCTTGTGCACGATGTTTTGTACAT
TGAGAGTGGTAGAGTGCCCTTCCCCAAATACAAGACTACTACTCGAGGAA
GCTATACCACATCTCAATAACTTCATCAAAGGTAGGTGACTCCAATTCTC
TTGATCATGCCATAATAGAACGGATTTAAGTTATACGCACTGACTGACAA
CATAGTAAAAAAAATTTAGACTCGTATGCTAGTAGAATCGGTGATAGGCT
CAACTCGCACAGCTTTTCTCAAAAAGACCTTAAATCATTAAGAGAATCTC
ACACCTTATATATAACTTTCTAATCTTTTCAGTTGCTAATATGCTAACTT
TATTCGCACATCCAACAATTGGTATGAAATTGAGCTTTCAAAATTAATTG
CTTATGATCAAGTGTCGTGGTGTATGTTTGCACCTCAAAACACAAAAGTG
TATGTGGTGTTGGACATTACTTCAAACCATGCAAGTATCACTAACATTAA
AACATAGTACTAGTGCTAAAGTGATGTCATGAACTAATTAATCACATTTT
TGTCT


Pfam accession: Myb_DNA-binding
Brief BLAST results against the "ESTobacco" dataset.

TOBFAC ID Accesion E Value Bit Score Definition


Brief BLAST results against the "GenBank Protein" dataset.

TOBFAC ID Accession E Value Bit Score Definition
MYB-related_52 CAB91874 4.81766e-27 124.02 SANT/MYB domain protein [Lycopersicon esculentum]
MYB-related_52 CAE47523 4.81766e-27 124.02 SANT/MYB protein [Lycopersicon esculentum]
MYB-related_52 AAX48042 1.11065e-23 112.849 RADIALIS [Antirrhinum majus]
MYB-related_52 AAG12684 1.60378e-22 108.997 myb-related protein; 20671-21051 [Arabidopsis thaliana]
MYB-related_52 AAS09995 1.60378e-22 108.997 MYB transcription factor [Arabidopsis thaliana]


Component TGI GSRs via NCBI:

ET047212

ET047213

ET049713

ET043015

ET051095

Papers related to tobacco and family MYB-related:

Suzuki K, Nishiuchi T, Nakayama Y, Ito M, Shinshi H Elicitor-induced down-regulation of cell cycle-related genes in tobacco cells PLANT CELL AND ENVIRONMENT 29 (2): 183-191 2006 PMID: 17080634

Rowland,O., Ludwig,A.A., Merrick,C.J., Baillieul,F., Tracy,F.E., Durrant,W.E., Fritz-Laylin,L., Nekrasov,V., Sjolander,K., Yoshioka,H. and Jones,J.D. Functional Analysis of Avr9/Cf-9 Rapidly Elicited Genes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9-Dependent Disease Resistance in Tomato PLANT CELL 17 (1): 295-310 2005 PMID: 15598806

McHale NA, Koning RE. PHANTASTICA regulates development of the adaxial mesophyll in Nicotiana leaves. PLANT CELL 16 (5):1251-62 2004 PMID: 15084717

Araki S, Ito M, Soyano T, Nishihama R, Machida Y Mitotic cyclins stimulate the activity of c-Myb-like factors for transactivation of G(2)/M phase-specific genes in tobacco JOURNAL OF BIOLOGICAL CHEMISTRY 279 (31): 32979-32988 2004 PMID: 15175336

Kyo,M., Hattori,S., Yamaji,N., Pechan,P. and Fukui,H. Cloning and characterization of cDNAs associated with the embryogenic dedifferentiation of tobacco immature pollen grains PLANT SCIENCE 164: 1057-1066 2003 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TBH-486BPW1-1&_user=709071&_coverDate=06%2F30%2F2003&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000039638&_version=1&_urlVersion=0&_userid=709071&md5=bea469f86d86456acadea8f5326b36e9

Ito M, Araki S, Matsunaga S, Itoh T, Nishihama R, Machida Y, Doonan JH, Watanabe A G2/M-phase-specific transcription during the plant cell cycle is mediated by c-Myb-like transcription factors PLANT CELL 13 (8): 1891-1905 2001 PMID: 11487700

Yang,S., Sweetman,J.P., Amirsadeghi,S., Barghchi,M., Huttly,A.K., Chung,W.I. and Twell,D. Novel anther-specific myb genes from tobacco as putative regulators of phenylalanine ammonia-lyase expression PLANT PHYSIOLOGY 126 (4): 1738-1753 2001 PMID: 11500571

Sugimoto,K., Takeda,S. and Hirochika,H. MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes PLANT CELL 12 (12): 2511-2528 2000 PMID: 11148294

Payne T, Clement J, Arnold D, Lloyd A Heterologous myb genes distinct from GL1 enhance trichome production when overexpressed in Nicotiana tabacum DEVELOPMENT 126 (4): 671-682 1999 PMID: 9895315

Yang,Y. and Klessig,D.F. Isolation and characterization of a tobacco mosaic virus-inducible myb oncogene homolog from tobacco PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 93 (25): 14972-14977 1996 PMID: 8962166



Tobacco published genes related to transcription factor family MYB-related
Family Genbank ID Name PMID


Six frame translation of MYB-related_52
>MYB-related_52_1 [tobfac_id=MYB-related_52] [frame=1]
*PLHQTLRYPSFDSLYKQPFASSFFTKQLKA*LLSSACSLLLVSSSFQQIAFLFPIYTYI
L*LANRDRI*AQCRLNMGLAPGQQNRTRPLRRHWQCMTKTLVIVGPMLPKQLEEKQLKR*
NDTMKSLCTMFCTLRVVECPSPNTRLLLEEAIPHLNNFIKGR*LQFS*SCHNRTDLSYTH
*LTT**KKFRLVC**NR**AQLAQLFSKRP*IIKRISHLIYNFLIFSVANMLTLFAHPTI
GMKLSFQN*LLMIKCRGVCLHLKTQKCMWCWTLLQTMQVSLTLKHSTSAKVMS*TN*SHF
CL
>MYB-related_52_2 [tobfac_id=MYB-related_52] [frame=2]
NRYTRP*GTLVLTPFISSPLPVLFSQNSSKLNYSPLLALFFLLALPFNKLPSFFRYIHIS
CN*QIEIEYELNVVSTWVWLLDSKTEQGL*EGIGSV*QRHL*SLVQCCQSSWRKNS*RGE
TTL*NPCARCFVH*EW*SALPQIQDYYSRKLYHISITSSKVGDSNSLDHAIIERI*VIRT
D*QHSKKNLDSYASRIGDRLNSHSFSQKDLKSLRESHTLYITF*SFQLLIC*LYSHIQQL
V*N*AFKINCL*SSVVVYVCTSKHKSVCGVGHYFKPCKYH*H*NIVLVLK*CHELINHIF
VX
>MYB-related_52_3 [tobfac_id=MYB-related_52] [frame=3]
TATPDPKVP*F*LPL*AALCQFFFHKTAQSLITLLCLLSSSC*LFLSTNCLPFSDIYIYL
VISK*RSNMSSMSSQHGSGSWTAKQNKAFEKALAVYDKDTCDRWSNVAKAVGGKTAEEVK
RHYEILVHDVLYIESGRVPFPKYKTTTRGSYTTSQ*LHQR*VTPILLIMP**NGFKLYAL
TDNIVKKI*TRMLVESVIGSTRTAFLKKTLNH*ENLTPYI*LSNLFSC*YANFIRTSNNW
YEIELSKLIAYDQVSWCMFAPQNTKVYVVLDITSNHASITNIKT*Y*C*SDVMN*LITFL
S
>MYB-related_52_4 [tobfac_id=MYB-related_52] [frame=-1]
TKM*LISS*HHFSTSTMF*C**YLHGLK*CPTPHTLLCFEVQTYTTTLDHKQLILKAQFH
TNCWMCE*S*HISN*KD*KVIYKV*DSLNDLRSF*EKLCELSLSPILLAYESKFFLLCCQ
SVRIT*IRSIMA*SRELESPTFDEVIEMWYSFLE**SCIWGRALYHSQCTKHRAQGFHSV
VSPLQLFFLQLLWQHWTNDHKCLCHTLPMPSQRPCSVLLSRSQTHVETTLSSYSISIC*L
QDICIYRKKEGNLLKGRANKKKRASRGE*LSFELFCEKRTGKGLLIKGVKTRVP*GLV*R
L
>MYB-related_52_5 [tobfac_id=MYB-related_52] [frame=-2]
DKNVIN*FMTSL*H*YYVLMLVILAWFEVMSNTTYTFVF*GANIHHDT*S*AINFESSIS
YQLLDVRIKLAY*QLKRLESYI*GVRFS**FKVFLRKAVRVEPITDSTSIRV*IFFTMLS
VSAYNLNPFYYGMIKRIGVTYL**SY*DVV*LPRVVVLYLGKGTLPLSMYKTSCTRIS*C
RFTSSAVFPPTALATLDQRSQVSLSYTANAFSKALFCFAVQEPDPC*DDIELIFDLYLLI
TRYMYISEKGRQFVERKS*QEEESKQRRVIKL*AVL*KKNWQRAAYKGSQN*GTLGSGVA
VX
>MYB-related_52_6 [tobfac_id=MYB-related_52] [frame=-3]
RQKCD*LVHDITLALVLCFNVSDTCMV*SNVQHHIHFCVLRCKHTPRHLIISN*F*KLNF
IPIVGCANKVSILATEKIRKLYIRCEILLMI*GLFEKSCAS*AYHRFY*HTSLNFFYYVV
SQCV*LKSVLLWHDQENWSHLPLMKLLRCGIASSSSSLVFGEGHSTTLNVQNIVHKDFIV
SFHLFSCFSSNCFGNIGPTITSVFVIHCQCLLKGLVLFCCPGARPMLRRH*AHIRSLFAN
YKIYVYIGKRKAIC*KEELTRRREQAEESN*ALSCFVKKELAKGCL*RESKLGYLRVWCS
GX


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