| Family | Genbank ID | Name | PMID |
| AP2 | AY461432 | NtANTL (AP2 family) | PMID: 15746156 |
| ARF | DQ340258.1 | ARF2-like protein | |
| AUX-IAA | AF123505 | Nt-iaa2.5 deduced protein | |
| bHLH | EF051132 | bHLH domain-containing | |
| bZIP | DQ073639 | bZIP | |
| bZIP | AY998018 | TGA10 | PMID: 12777042 |
| bZIP | Z48602 | TAF-2 | |
| bZIP | X60363 | TAF-1 | PMID: 2050116 |
| bZIP | AY061648 | BZI-1 | PMID: 11919711 |
| bZIP | AY045572 | BZI-4 | |
| bZIP | AY045571 | BZI-3/tbzF | PMID: 11737777 |
| bZIP | AY045570 | BZI-2 | PMID: 11737777 |
| bZIP | AB040471 | RSG | PMID: 10852936 |
| bZIP | AF031487 | TGA2.2 | |
| bZIP | D63951 | TBZ17 | PMID: 9473660 |
| bZIP | NTU90214 | TGA2.1 | |
| bZIP | Z48603 | TAF-3 | |
| bZIP | M62855 | PG13 (ASF-1/G13) | PMID: 1921969 |
| C2C2-GATA | AB107693 | AGP5 | |
| C2C2-GATA | AB107692 | AGP4 | PMID: 14617085 |
| C2C2-GATA | AB107691 | AGP3 | PMID: 14617085 |
| C2C2-GATA | AB107690 | AGP2 | |
| C2C2-GATA | AB107689 | AGP1 | PMID: 14617085 |
| C2C2-GATA | X73111 | GATA-1 | |
| C2H2 | AB186899 | ZFT1 | |
| Dof | AJ009594 | BBF1 | |
| Dof | X97947 | BBF3 | PMID: 8771779 |
| Dof | X97946 | NtBBF2b | |
| Dof | X97945 | NtBBF2a | |
| Dof | X97942 | NtBBF1.1 | PMID: 8771779 |
| E2F | AB025347 | E2F-like | PMID: 10571072 |
| ERF | AY655738 | ERF5 | PMID: 15497409 |
| ERF | AY286010 | CEF1 | PMID: 15918028 |
| ERF | DQ403814 | DREB1A | |
| ERF | AJ299252 | ap2/ERF47 | |
| ERF | AY627866 | EREBP-6 | |
| ERF | AY627865 | EREBP-5 | |
| ERF | AF211531 | ACRE111B | PMID: 10852940 |
| ERF | AF211530 | ACRE111A | PMID: 10852940 |
| ERF | AF211527 | ACRE1 | PMID: 10852940 |
| ERF | AX700837 | Patent WO03012096 | |
| ERF | TOBBY4D | EREBP-2 | PMID: 7756828 |
| ERF | TOBBY4C | EREBP-4 | PMID: 7756828 |
| ERF | TOBBY4B | EREBP-3 | PMID: 7756828 |
| ERF | AF058827 | TSI1 | PMID: 11340180 |
| ERF | AB024575 | EREBP-5 | PMID: 10902919 |
| ERF | AF057373 | EREBP1-2 allele | PMID: 9725022 |
| ERF | TOBBY4A | ERF1 | PMID: 7756828 |
| ERF | NTU81157 | S25-XP1 | |
| ERF | CQ808982 | ORC1 | PMID: 12826618 |
| ERF | CQ808845 | JAP1 | PMID: 12826618 |
| FHA | AF411856 | NtFHA1 | PMID: 12149245 |
| Homeodomain | AF544054 | knotted 3 | |
| Homeodomain | AF544053 | knotted 2 | |
| Homeodomain | AF544052 | knotted 1 | |
| Homeodomain | AY169493 | H1 | |
| Homeodomain | AY101610 | Hfi22 | PMID: 12177465 |
| Homeodomain | AB025715 | homeobox 22 | PMID: 10406119 |
| Homeodomain | AB025714 | homeobox 20 | |
| Homeodomain | AB025713 | homeobox 9 | PMID: 10406119 |
| Homeodomain | AJ006180 | NTHD2 | PMID: 10368176 |
| Homeodomain | AJ006179 | HD1 | |
| Homeodomain | AB025573 | NTH1 | PMID: 10501029 |
| Homeodomain | AB004797 | NTH23 | |
| Homeodomain | AB004785 | NTH15 | |
| LIM | AF184109 | WLIM1 | PMID: 16905656 |
| LIM | AF116851 | PLIM-2 | |
| LIM | AB023479 | Ntlim1 | PMID: 10849346 |
| MADS | DQ534202 | FUL | |
| MADS | X96428 | MADS-box | PMID: 8893543 |
| MADS | X76188 | tobmads1 | |
| MADS | X67959 | NTGLOBOSA | PMID: 8099711 |
| MADS | AY183721 | Mads1;11 | PMID: 12531471 |
| MADS | AF385746 | MADS11 | |
| MADS | AF068723 | NtMADS4 | |
| MADS | AF068724 | NtMADS5 | |
| MADS | AF009127 | NAP1-2 | |
| MADS | AF009126 | NAP1-1 | |
| MADS | TOBNAG1A | NAG1 | PMID: 7507255 |
| MBF | AB072698 | NtMBF1a | PMID: 12021302 |
| NAC | AB021178 | TERN | |
| R2R3-MYB | AY559043 | phantastica | |
| R2R3-MYB | AB236951 | NtMYBJS1 | |
| R2R3-MYB | AB032537 | B25 | |
| R2R3-MYB | AY775042 | ACRE151 | |
| R2R3-MYB | AB056124 | NtmybB | PMID: 11487700 |
| R2R3-MYB | AB056123 | NtmybA2 | PMID: 11487700 |
| R2R3-MYB | AB056122 | NtmybA1 | |
| R2R3-MYB | AF198499 | mybAS1 | |
| R2R3-MYB | AF198498 | mybAS2 | PMID: 11500571 |
| R2R3-MYB | AB028652 | LBM4 | PMID: 11148294 |
| R2R3-MYB | AB028650 | LBM2 | PMID: 11148294 |
| R2R3-MYB | AB028649 | LBM1 | PMID: 11148294 |
| R2R3-MYB | AB028651 | LBM3 | |
| R2R3-MYB | AB017693 | WERBP-1 | |
| R2R3-MYB | NTU72762 | myb1 | PMID: 8962166 |
| TAZ | NTU01961 | CAP | |
| WRKY | DQ460475 | WRKY12 | |
| WRKY | AJ871281 | WRKY11 | |
| WRKY | AJ871280 | WRKY10 | |
| WRKY | AB063576 | NtWRKY-9 | PMID: 11791715 |
| WRKY | AB063575 | NtWRKY-8 | PMID: 11791715 |
| WRKY | AB063574 | NtWRKY-7 | PMID: 11791715 |
| WRKY | AB063573 | NtWRKY-6 | |
| WRKY | AB026890 | NtWRKY4 | PMID: 15358520 |
| WRKY | AB022693 | NtWRKY1 | PMID: 15358520 |
| WRKY | AB020590 | NtWRKY2 | PMID: 15358520 |
| WRKY | AY220477 | ACRE126 | |
| WRKY | AB041520 | NtEIG-D48 | |
| WRKY | AX700945 | 117 (Patent WO03012096) | |
| WRKY | AB028022 | wizz | |
| WRKY | AF193771 | WRKY4 | |
| WRKY | AF193770 | WRKY3 | |
| WRKY | AB024510 | TMV response-related gene | |
| WRKY | AB020023 | NtWRKY3 | |
| WRKY | AF096299 | WRKY2 | |
| WRKY | AF096298 | WRKY1 | |
| YABBY | AY854800 | CRABS CLAW | PMID: 16236772 |