Homology Search
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BLASTP Amino Acid > Protein
BLASTN Nucleotide > Nucleotide
BLASTX Nucleotide > Protein
TBLASTN Protein > Nucleotide
TBLASTX Nucleotide > Nucleotide
Blast Program
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Program Descriptions
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-m
pairwise
query-anchored showing identities
query-anchored no identities
flat query-anchored, show identities
flat query-anchored, no identities
query-anchored no identities and blunt ends
flat query-anchored, no identities and blunt ends
XML Formatted Blast output
tabular
tabular with comment lines
ASN, text
Alignment View. The XML Format Blast output is formatted with additional information and links.
-M
BLOSUM45
BLOSUM62
BLOSUM80
PAM30
PAM70
Specifies which protein scoring matrix to use Dfault BLOSUM62
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-e
1e-100
1e-50
1e-10
1e-8
1e-5
1e-1
1.00
10.0
Specifies Expectation value cutoff
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help
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-v
Sets the upper limit of one line descriptions to show in the result
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help
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-b
Sets the upper limit on number of database sequence to show alignments for.
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-n
Activates MEGABLAST algorithm for blastn search Default = unchecked (false)
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-A
Multiple Hits window size. Default is 0 for blastn/megablast (not used), 50 for discontiguous megablast, and 40 for all others.
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help
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-F
Specifies filter(s) to be used to mask query sequence. Change to F to disable the filter. Default filter removes low complexity regions.
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help
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Search library Selections
To select multiple libraries hold CONTROL-KEY or SHIFT-KEY and select.
Search library details
Nucleotide Nicotiana tabacum Gene Index ESTs
Nucleotide Tobacco Genome Institute GSRs
Nucleotide ESTobacco ESTs
Nucleotide TOBFAC transcription factors in tobacco
Protein NCBI NR proteins
Protein Refeq protein
Paste sequences here
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Copy Example Sequence
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For technical support, please email
Tom Laudeman
twl8n@virginia.edu or
Jim Roberts
jhr2b@virginia.edu
Copyright (C) 2008 University of Virginia