Descriptive information for Search Libraries

Common Name	Nicotiana tabacum Gene Index ESTs
Internal Name	ntgi
Type	Nucleotide
Reference Site	http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=tobacco
Library Description	Nicotiana tabacum Gene Index
File Name	ntgi.fasta
File Download Site	http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=tobacco
File Date	2008-07-15
File Version	4
File Comments	contiged ESTs

Common Name	Tobacco Genome Institute GSRs
Internal Name	tgi_tobacco_gsr
Type	Nucleotide
Reference Site	http://cowpeagenomics.med.virginia.edu/CGKB/
Library Description	Tobacco Genome Initiative gene space reads orginally created by the TGI at NCSU.
File Name	CHO_OF_2006-03-06.fasta
File Download Site	http://cowpeagenomics.med.virginia.edu/CGKB/index.pl?gene_space_read_download
File Date	2006-05-05
File Version
File Comments	Gene space reads from TGI 2006-03-06 http://www.tobaccogenome.org/

Common Name	ESTobacco ESTs
Internal Name	tobacco_ests
Type	Nucleotide
Reference Site
Library Description	ESTs from the ESTobacco project in Europe.
File Name	est_nicotiana_tabacum_genbank_050206.fasta
File Download Site
File Date	2007-09-18
File Version
File Comments	ESTs from the ESTobacco project in Europe.

Common Name	TOBFAC transcription factors in tobacco
Internal Name	tobfac
Type	Nucleotide
Reference Site	http://compsysbio.achs.virginia.edu/tobfac/
Library Description	From Paul Rushton at UVa; See the fasta headers
File Name	tobfac_v2.fasta
File Download Site	http://compsysbio.achs.virginia.edu/tobfac/
File Date	2008-11-18
File Version	2
File Comments	Corrected fasta headers. New format trace_name, and only final v1 sequences included. Tobacco transcription factors, 1455 gene seqs, +42 seqs, Paul Rushton, Feb 15 2007, Mar 26 2007 Exported on Nov 18, 2008 from bio_sequence. Originals created from bio_sequence database on 2008/02/01 14:46:07 by UVA ITC-ACHS

Common Name	NCBI NR proteins
Internal Name	ncbi
Type	Protein
Reference Site	http://www.ncbi.nlm.nih.gov/
Library Description	non-redundant protein sequence database with entries from GenPept, Swissprot, PIR, PDF, PDB, and RefSeq
File Name	nr
File Download Site	ftp://ftp.ncbi.nih.gov/blast/db/FASTA
File Date	2009-04-29
File Version	2009-04-29
File Comments	Non-redundant protein sequence database with entries from GenPept, Swissprot, PIR, PDF, PDB, and RefSeq

Common Name	Refeq protein
Internal Name	refseq_protein
Type	Protein
Reference Site	ftp://ftp.ncbi.nih.gov/blast/db/
Library Description	NCBI Refseq protein sequences.
File Name	refseq_protein
File Download Site	ftp://ftp.ncbi.nih.gov/blast/db/
File Date	2009-04-29
File Version	2009-04-29
File Comments	Refseq protein from NCBI. Dated Apr 29 2009.